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Fix splash2 benchmark 

During the last commit of splash2 benchmark it seems before committing
when we ran "make clean", it effectively undid what the patch at below
link did
http://www.capsl.udel.edu/splash/Download.html

Fix this since without this it is not possible to build the arcane
splash2 benchmark.
This commit is contained in:
Sanchayan Maity 2017-04-26 21:33:02 +05:30
parent 2fcc51c2c1
commit 0f4b39775c
135 changed files with 9862 additions and 8916 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
splash2/codes/Makefile.config
View File

@ -6,7 +6,7 @@ CFLAGS := $(CFLAGS) -Wpadded -Winline -Wpointer-arith -Wsign-compare -Wendif-lab
LDFLAGS := -lm libpthread.a m5op_x86.o
BASEDIR := $(HOME)/GitSource/gem5/splash2/codes
MACROS := $(BASEDIR)/null_macros/c.m4.null.POSIX_BARRIER
MACROS := $(BASEDIR)/null_macros/c.m4.null.POSIX
M4 := m4 -s -Ulen -Uindex
x = *

29
splash2/codes/apps/barnes/stdinc.H
View File

@ -21,14 +21,13 @@
#ifndef _STDINC_H_
#define _STDINC_H_
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <time.h>
#include <sys/times.h>
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include <ctime>
#define error(msg, ...) printf(msg, ##__VA_ARGS__);
/*
* STREAM: a replacement for FILE *.
@ -60,7 +59,7 @@ typedef char byte;
*/
typedef char *string;
/*
* REAL: default type is double;
*/
@ -99,7 +98,7 @@ typedef real (*rproc)();
#define FOUR_PI 12.56637061435917295385
#define HALF_PI 1.57079632679489661923
#define FRTHRD_PI 4.18879020478639098462
/*
* ABS: returns the absolute value of its argument
* MAX: returns the argument with the highest value
@ -108,13 +107,13 @@ typedef real (*rproc)();
#define ABS(x) (((x) < 0) ? -(x) : (x))
#include "code.h"
#include "code_io.h"
#include "defs.h"
#include "getparam.h"
#include "grav.h"
#include "load.h"
#include "util.h"
#include "vectmath.h"
#include "defs.h"
#include "code.h"
#include "util.h"
#include "load.h"
#include "code_io.h"
#include "grav.h"
#include "getparam.h"
#endif

7
splash2/codes/apps/fmm/box.C
View File

@ -14,13 +14,12 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdio>
#include "box.h"
#include <stdio.h>
#include <math.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
/* How many boxes can fit on one line */
#define BOXES_PER_LINE 4

9
splash2/codes/apps/fmm/construct_grid.C
View File

@ -14,15 +14,14 @@
/* */
/*************************************************************************/
#include <cfloat>
#include <cstdio>
#include "box.h"
#include "construct_grid.h"
#include <stdio.h>
#include <float.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#include "construct_grid.h"
#define MY_PARTICLES (Local[my_id].Particles)
#define MY_NUM_PARTICLES (Local[my_id].Num_Particles)

4
splash2/codes/apps/fmm/cost_zones.C
View File

@ -14,11 +14,11 @@
/* */
/*************************************************************************/
#include "box.h"
#include "cost_zones.h"
#include "defs.h"
#include "memory.h"
#include "box.h"
#include "partition_grid.h"
#include "cost_zones.h"
#define NUM_DIRECTIONS 4

7
splash2/codes/apps/fmm/defs.C
View File

@ -14,10 +14,9 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdarg>
#include <cstdio>
#include <stdio.h>
#include <stdarg.h>
#include <math.h>
#include "defs.h"
#include "memory.h"

10
splash2/codes/apps/fmm/defs.H
View File

@ -17,11 +17,11 @@
#ifndef _Defs_H
#define _Defs_H 1
#include <cassert>
#include <climits>
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <stdio.h>
#include <stdlib.h>
#include <assert.h>
#include <math.h>
#include <limits.h>
/* Define booleans */
#ifdef TRUE

19
splash2/codes/apps/fmm/fmm.C
View File

@ -66,20 +66,19 @@
*/
#include <cerrno>
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include "box.h"
#include "construct_grid.h"
#include "cost_zones.h"
#include <stdio.h>
#include <math.h>
#include <errno.h>
#include <stdlib.h>
#include <string.h>
#include "defs.h"
#include "interactions.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#include "cost_zones.h"
#include "construct_grid.h"
#include "interactions.h"
#define BASE ((((double) 4) - sqrt((double) 2)) / sqrt((double) 2))
#define MAX_LINE_SIZE 100

9
splash2/codes/apps/fmm/interactions.C
View File

@ -14,15 +14,14 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdio>
#include "box.h"
#include <stdio.h>
#include <math.h>
#include "defs.h"
#include "interactions.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#include "interactions.h"
static real Inv[MAX_EXPANSION_TERMS + 1];
static real OverInc[MAX_EXPANSION_TERMS + 1];

3
splash2/codes/apps/fmm/memory.C
View File

@ -14,8 +14,7 @@
/* */
/*************************************************************************/
#include <cfloat>
#include <float.h>
#include "defs.h"
#include "memory.h"

2
splash2/codes/apps/fmm/memory.H
View File

@ -17,9 +17,9 @@
#ifndef _Memory_H
#define _Memory_H 1
#include "box.h"
#include "defs.h"
#include "particle.h"
#include "box.h"
#define MAX_LOCKS 2048

6
splash2/codes/apps/fmm/particle.C
View File

@ -14,11 +14,9 @@
/* */
/*************************************************************************/
#include <stdio.h>
#include <unistd.h>
#include <cstdio>
#include <cstdlib>
#include <stdlib.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"

7
splash2/codes/apps/fmm/partition_grid.C
View File

@ -14,13 +14,12 @@
/* */
/*************************************************************************/
#include <climits>
#include <cmath>
#include "box.h"
#include <math.h>
#include <limits.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#define DIVISOR(x) ((x <= 20) ? 1 : ((x - 20) * 50))

2
splash2/codes/apps/fmm/partition_grid.H
View File

@ -17,8 +17,8 @@
#ifndef _Partition_H
#define _Partition_H 1
#include "box.h"
#include "defs.h"
#include "box.h"
/* Void function type */
typedef void (*partition_function)(long my_id, box *b);

7
splash2/codes/apps/ocean/contiguous_partitions/jacobcalc.C
View File

@ -19,10 +19,9 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void jacobcalc(double ***x, double ***y, double ***z, long pid, long firstrow, long lastrow, long firstcol, long lastcol)

7
splash2/codes/apps/ocean/contiguous_partitions/jacobcalc2.C
View File

@ -19,10 +19,9 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void jacobcalc2(double ****x, double ****y, double ****z, long psiindex, long pid, long firstrow, long lastrow, long firstcol, long lastcol)

7
splash2/codes/apps/ocean/contiguous_partitions/laplacalc.C
View File

@ -18,10 +18,9 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void laplacalc(long procid, double ****x, double ****z, long psiindex, long firstrow, long lastrow, long firstcol, long lastcol)

9
splash2/codes/apps/ocean/contiguous_partitions/main.C
View File

@ -56,11 +56,10 @@ MAIN_ENV
#define DOWNRIGHT 7
#define PAGE_SIZE 4096
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
struct multi_struct *multi;

9
splash2/codes/apps/ocean/contiguous_partitions/multi.C
View File

@ -21,11 +21,10 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
/* perform multigrid (w cycles) */

9
splash2/codes/apps/ocean/contiguous_partitions/slave1.C
View File

@ -20,11 +20,10 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
void slave()

9
splash2/codes/apps/ocean/contiguous_partitions/slave2.C
View File

@ -20,11 +20,10 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
void slave2(long procid, long firstrow, long lastrow, long numrows, long firstcol, long lastcol, long numcols)

5
splash2/codes/apps/ocean/contiguous_partitions/subblock.C
View File

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "decs.h"
void subblock()

7
splash2/codes/apps/ocean/non_contiguous_partitions/jacobcalc.C
View File

@ -17,10 +17,9 @@
/* does the arakawa jacobian calculation (of the x and y matrices,
putting the results in the z matrix) for a subblock. */
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void jacobcalc(double x[IMAX][JMAX], double y[IMAX][JMAX], double z[IMAX][JMAX], long pid, long firstrow, long lastrow, long firstcol, long lastcol, long numrows, long numcols)

7
splash2/codes/apps/ocean/non_contiguous_partitions/laplacalc.C
View File

@ -20,10 +20,9 @@
performs the laplacian calculation for a subblock. */
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void laplacalc(double x[IMAX][JMAX], double z[IMAX][JMAX], long firstrow, long lastrow, long firstcol, long lastcol, long numrows, long numcols)

9
splash2/codes/apps/ocean/non_contiguous_partitions/main.C
View File

@ -23,11 +23,10 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
MAIN_ENV

9
splash2/codes/apps/ocean/non_contiguous_partitions/multi.C
View File

@ -19,11 +19,10 @@
iterations, w cycles, and the method of half-injection for
residual computation */
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
/* perform multigrid (w cycles) */

8
splash2/codes/apps/ocean/non_contiguous_partitions/slave1.C
View File

@ -18,10 +18,10 @@
subroutine slave
**************** */
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"

9
splash2/codes/apps/ocean/non_contiguous_partitions/slave2.C
View File

@ -18,11 +18,10 @@
subroutine slave2
**************** */
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
void slave2(long procid, long firstrow, long lastrow, long numrows, long firstcol, long lastcol, long numcols)

2
splash2/codes/apps/radiosity/display.C
View File

@ -14,7 +14,7 @@
/* */
/*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

2
splash2/codes/apps/radiosity/elemman.C
View File

@ -23,7 +23,7 @@
*/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

3
splash2/codes/apps/radiosity/glibps/glibps.c
View File

@ -8,9 +8,8 @@
*
***************************************************************/
#include <math.h>
#include <stdio.h>
#include <math.h>
#include "pslib.h"
#define SCREEN_WIDTH (6.0*72)

2
splash2/codes/apps/radiosity/modelman.C
View File

@ -24,7 +24,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

2
splash2/codes/apps/radiosity/patchman.C
View File

@ -24,7 +24,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

20
splash2/codes/apps/radiosity/rad_main.C
View File

@ -22,15 +22,12 @@
*
***************************************************************/
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <string.h>
#if defined(SGI_GL)
#include <gl.h>
#if defined(GL_NASA)
#include <panel.h>
#endif
#endif
@ -283,16 +280,9 @@ int main(int argc, char *argv[])
min_vertex_time = timing[i]->vertex_time;
}
printf("\n\n%8s%20lu%20lu%12lu%12lu\n","Max", max_rad_time, max_refine_time,
max_wait_time, max_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Min", min_rad_time, min_refine_time,
min_wait_time, min_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Avg",
(long) (((double) total_rad_time) /
((double) (1.0 * n_processors))),
(long) (((double) total_refine_time) / ((double) (1.0 * n_processors))),
(long) (((double) total_wait_time) / ((double) (1.0 * n_processors))),
(long) (((double) total_vertex_time) / ((double) (1.0 * n_processors))));
printf("\n\n%8s%20lu%20lu%12lu%12lu\n","Max", max_rad_time, max_refine_time, max_wait_time, max_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Min", min_rad_time, min_refine_time, min_wait_time, min_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Avg", (long) (((double) total_rad_time) / ((double) (1.0 * n_processors))), (long) (((double) total_refine_time) / ((double) (1.0 * n_processors))), (long) (((double) total_wait_time) / ((double) (1.0 * n_processors))), (long) (((double) total_vertex_time) / ((double) (1.0 * n_processors))));
printf("\n\n");
}

2
splash2/codes/apps/radiosity/rad_tools.C
View File

@ -20,7 +20,7 @@
*
***************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

4
splash2/codes/apps/radiosity/radiosity.H
View File

@ -21,8 +21,7 @@ of the program, as well as lobal data structure declarations */
#ifndef _RADIOSITY_H
#define _RADIOSITY_H
#include <cmath>
#include <math.h>
include(parallel.h)
include(patch.h)
include(model.h)
@ -30,6 +29,7 @@ include(task.h)
#include "glib.h"
#include "pslib.h"
/****************************************
*
* Configuration Parameters

2
splash2/codes/apps/radiosity/room_model.C
View File

@ -28,7 +28,7 @@
EXTERN_ENV;
#include <cstdio>
#include <stdio.h>
include(radiosity.h)

2
splash2/codes/apps/radiosity/smallobj.C
View File

@ -21,7 +21,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

2
splash2/codes/apps/radiosity/taskman.C
View File

@ -24,7 +24,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

4
splash2/codes/apps/radiosity/visible.C
View File

@ -21,8 +21,8 @@
*
***************************************************************/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
EXTERN_ENV;

7
splash2/codes/apps/raytrace/bbox.C
View File

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* InquireBoundBoxValues - return min and max bound values for each coordinate axis

7
splash2/codes/apps/raytrace/cr.C
View File

@ -26,11 +26,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
GRID *gridlist = NULL;
/*

9
splash2/codes/apps/raytrace/env.C
View File

@ -25,12 +25,13 @@
* routines to manipulate lights, colors, and to print the environment.
*/
#include <cmath>
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <math.h>
#include <string.h>
#include "rt.h"
/*
* Define environment specification opcodes.
*/

7
splash2/codes/apps/raytrace/fbuf.C
View File

@ -31,11 +31,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
static struct /* Runlength pixel definition. */
{
U8 r, g, b; /* Color. */

10
splash2/codes/apps/raytrace/geo.C
View File

@ -27,14 +27,14 @@
*/
#include <stdio.h>
#include <fcntl.h>
#include <cmath>
#include <cstdio>
#include <cstring>
#include <math.h>
#include <string.h>
#include "rt.h"
/*
* Allocate and initialize sphere function pointer array.
*/

5
splash2/codes/apps/raytrace/huprn.C
View File

@ -25,9 +25,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
VOID prn_voxel(VOXEL *v)

7
splash2/codes/apps/raytrace/husetup.C
View File

@ -26,11 +26,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* Huniform_defaults - setup the five HUG parameter defaults

5
splash2/codes/apps/raytrace/hutv.C
View File

@ -23,9 +23,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*

7
splash2/codes/apps/raytrace/isect.C
View File

@ -26,11 +26,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* Intersect - intersect ray with objects in linked list

6
splash2/codes/apps/raytrace/main.C
View File

@ -80,11 +80,11 @@
#define VERSION "1.00"
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
CHAR *ProgName = "RAYTRACE"; /* The program name. */
INT nprocs = 1; /* The number of processors to use. */
INT MaxGlobMem = 32; /* Maximum global memory needed (MB).*/

7
splash2/codes/apps/raytrace/matrix.C
View File

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
typedef REAL GJMATRIX[4][8]; /* Matrix for Gauss-Jordan inversion.*/

7
splash2/codes/apps/raytrace/memory.C
View File

@ -29,11 +29,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
#define CKSM 0x55AA55AA
#define PAGESIZE (4*1024)
#define THRESHOLD (sizeof(NODE) + 16)

7
splash2/codes/apps/raytrace/poly.C
View File

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* PolyName - return the object name

5
splash2/codes/apps/raytrace/raystack.C
View File

@ -35,9 +35,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
#define PAGE_SIZE 4096

9
splash2/codes/apps/raytrace/rltotiff/rltotiff.c
View File

@ -14,12 +14,11 @@
/* */
/*************************************************************************/
#include <malloc.h>
#include <stdio.h>
#include <stdlib.h>
#include <unistd.h>
#include "tiff_rgba_io.h"
#include <stdio.h>
#include <unistd.h>
#include <malloc.h>
#include <stdlib.h>
typedef short SHORT;
typedef long LONG;

1
splash2/codes/apps/raytrace/rltotiff/tiff_rgba_io.c
View File

@ -25,7 +25,6 @@ static char sccsid[] = "@(#)savemap.c 1.3 2/6/9q";
#include <stdio.h>
#include <stdlib.h>
#include <tiffio.h>
#include "tiff_rgba_io.h"
#define streq(a,b) (strcmp(a,b) == 0)

7
splash2/codes/apps/raytrace/shade.C
View File

@ -28,11 +28,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* SpecularDirection - compute reflected ray

7
splash2/codes/apps/raytrace/sph.C
View File

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* SphName - return the object name

5
splash2/codes/apps/raytrace/trace.C
View File

@ -25,9 +25,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*

7
splash2/codes/apps/raytrace/tri.C
View File

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
#define X_NORM 1
#define Y_NORM 2
#define Z_NORM 3

7
splash2/codes/apps/raytrace/workpool.C
View File

@ -30,11 +30,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* PutJob - put another job into pid's work pool

1
splash2/codes/apps/volrend/file.C
View File

@ -17,7 +17,6 @@
/********** storing/loading of large arrays to/from files **********/
#include <fcntl.h>
#include "incl.h"
#define PMODE 0644 /* RW for owner, R for group, R for others */

16
splash2/codes/apps/volrend/incl.H
View File

@ -21,15 +21,13 @@
*************************************************************************/
#include <sys/types.h>
#include <climits>
#include <cmath> /* Definitions for mathematical library */
#include <cstdio> /* Definitions for standard I/O library */
#include "address.h" /* Map address macros */
#include "user_options.h" /* User options defined at compile time */
#include "const.h" /* Constant definitions */
#include "my_types.h" /* User defined type */
#include "global.h" /* Global variables */
#include "macros.h" /* Definition of general C macros */
#include "my_types.h" /* User defined type */
#include "user_options.h" /* User options defined at compile time */
#include "address.h" /* Map address macros */
#include <stdio.h> /* Definitions for standard I/O library */
#include <math.h> /* Definitions for mathematical library */
#include <limits.h>
#include <sys/types.h>

10
splash2/codes/apps/volrend/main.C
View File

@ -26,13 +26,11 @@
*************************************************************************/
#include <sys/resource.h>
#include <sys/time.h>
#include <climits>
#include <cstring>
#include "incl.h"
#include <string.h>
#include <sys/time.h>
#include <sys/resource.h>
#include <limits.h>
#include "tiffio.h"
#define SH_MEM_AMT 60000000

3
splash2/codes/apps/volrend/map.C
View File

@ -20,8 +20,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
/* The following declarations show the layout of the .den file. */

3
splash2/codes/apps/volrend/normal.C
View File

@ -21,8 +21,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
/* The following declarations show the layout of the .norm file. */

3
splash2/codes/apps/volrend/octree.C
View File

@ -20,8 +20,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
#define WRITE_PYR(IBIT,ILEVEL,IZ,IY,IX)\

3
splash2/codes/apps/volrend/opacity.C
View File

@ -21,8 +21,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
/* The following declarations show the layout of the .opc file. */

4
splash2/codes/apps/water-nsquared/bndry.C
View File

@ -15,11 +15,11 @@
/*************************************************************************/
EXTERN_ENV
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* this routine puts the molecules back inside the box if they are out */
void BNDRY(long ProcID)

13
splash2/codes/apps/water-nsquared/cnstnt.C
View File

@ -15,15 +15,14 @@
/*************************************************************************/
EXTERN_ENV
#include <cstdio>
#include "cnst.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "parameters.h"
#include <stdio.h>
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "frcnst.h"
#include "fileio.h"
#include "parameters.h"
#include "global.h"
/* set up some constants
* N : NORDER + 1 = 7 for a sixth-order method

3
splash2/codes/apps/water-nsquared/cshift.C
View File

@ -15,8 +15,7 @@
/*************************************************************************/
EXTERN_ENV
#include <cmath>
#include <math.h>
#include "global.h"
/* return the value of a with the same sign as b */

12
splash2/codes/apps/water-nsquared/initia.C
View File

@ -15,16 +15,16 @@
/*************************************************************************/
EXTERN_ENV
#include "math.h"
#include "stdio.h"
#include "mdvar.h"
#include "water.h"
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "stdio.h"
#include "water.h"
#include "global.h"
void INITIA()
{

10
splash2/codes/apps/water-nsquared/interf.C
View File

@ -15,15 +15,15 @@
/*************************************************************************/
EXTERN_ENV
#include "cnst.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
double ****PFORCES;

10
splash2/codes/apps/water-nsquared/intraf.C
View File

@ -15,15 +15,15 @@
/*************************************************************************/
EXTERN_ENV
#include "frcnst.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "frcnst.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void INTRAF(double *VIR, long ProcID)
{

4
splash2/codes/apps/water-nsquared/kineti.C
View File

@ -15,12 +15,12 @@
/*************************************************************************/
EXTERN_ENV
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* this routine computes kinetic energy in each of the three spatial
dimensions, and puts the computed values in the SUM array */

14
splash2/codes/apps/water-nsquared/mdmain.C
View File

@ -15,16 +15,16 @@
/*************************************************************************/
EXTERN_ENV
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "stdio.h"
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "fileio.h"
#include "split.h"
#include "global.h"
/************************************************************************/

12
splash2/codes/apps/water-nsquared/poteng.C
View File

@ -15,15 +15,15 @@
/*************************************************************************/
EXTERN_ENV
#include "frcnst.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "frcnst.h"
#include "water.h"
#include "wwpot.h"
#include "math.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void POTENG(double *POTA, double *POTR, double *PTRF, long ProcID)
{

4
splash2/codes/apps/water-nsquared/predcor.C
View File

@ -15,11 +15,11 @@
/*************************************************************************/
EXTERN_ENV
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* predicts new values for displacement and its five derivatives
*

14
splash2/codes/apps/water-nsquared/syscons.C
View File

@ -15,16 +15,16 @@
/*************************************************************************/
EXTERN_ENV
#include <cmath>
#include "cnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "stdio.h"
#include <math.h>
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "global.h"
void SYSCNS() /* sets up some system constants */
{

15
splash2/codes/apps/water-nsquared/water.C
View File

@ -44,21 +44,20 @@
*/
MAIN_ENV
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <string.h>
#include "split.h"
/* include files for declarations */
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "water.h"
#include "wwpot.h"
long NMOL,NORDER,NATMO,NATMO3,NMOL1;
long NATOMS;

7
splash2/codes/apps/water-spatial/bndry.C
View File

@ -16,13 +16,12 @@
EXTERN_ENV
#include <cstdio>
#include "global.h"
#include "mddata.h"
#include <stdio.h>
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void BNDRY(long ProcID) /* this routine puts the molecules back inside the box if they are out */
{

15
splash2/codes/apps/water-spatial/cnstnt.C
View File

@ -16,16 +16,15 @@
EXTERN_ENV
#include <cstdio>
#include "cnst.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "parameters.h"
#include <stdio.h>
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "frcnst.h"
#include "fileio.h"
#include "parameters.h"
#include "mddata.h"
#include "global.h"
/* set up some constants; this routine is executed by
* a single processor before others are created

7
splash2/codes/apps/water-spatial/cshift.C
View File

@ -16,12 +16,11 @@
EXTERN_ENV
#include <cmath>
#include "global.h"
#include "mddata.h"
#include <math.h>
#include "parameters.h"
#include "mddata.h"
#include "water.h"
#include "global.h"
/* return the value of a with the same sign as b */
#define sign(a,b) (b < 0 ) ? ( (a < 0) ? a : -a) : ( (a < 0) ? -a : a)

13
splash2/codes/apps/water-spatial/initia.C
View File

@ -16,17 +16,16 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <math.h>
#include <stdio.h>
#include "mdvar.h"
#include "water.h"
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "water.h"
#include "global.h"
void INITIA()
{

15
splash2/codes/apps/water-spatial/interf.C
View File

@ -16,17 +16,16 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include "cnst.h"
#include "global.h"
#include "mddata.h"
#include <stdio.h>
#include <math.h>
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void INTERF(long DEST, double *VIR, long ProcID)
{

13
splash2/codes/apps/water-spatial/intraf.C
View File

@ -16,17 +16,16 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void INTRAF(double *VIR, long ProcID)
{

7
splash2/codes/apps/water-spatial/kineti.C
View File

@ -16,13 +16,12 @@
EXTERN_ENV
#include <cmath>
#include "global.h"
#include "mddata.h"
#include <math.h>
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* this routine computes kinetic energy in each of the three spatial
dimensions, and puts the computed values in the SUM array */

14
splash2/codes/apps/water-spatial/mdmain.C
View File

@ -16,17 +16,17 @@
EXTERN_ENV
#include <cstdio>
#include <stdio.h>
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "fileio.h"
#include "split.h"
#include "global.h"
/************************************************************************/

13
splash2/codes/apps/water-spatial/poteng.C
View File

@ -16,16 +16,15 @@
EXTERN_ENV
#include <cmath>
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "frcnst.h"
#include "water.h"
#include "wwpot.h"
#include <math.h>
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void POTENG(double *POTA, double *POTR, double *PTRF, long ProcID)
{

4
splash2/codes/apps/water-spatial/predcor.C
View File

@ -16,11 +16,11 @@
EXTERN_ENV
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* predicts new values for displacement and its five derivatives
* using Gear's sixth-order predictor-corrector method

13
splash2/codes/apps/water-spatial/syscons.C
View File

@ -15,16 +15,17 @@
/*************************************************************************/
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "cnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "global.h"
void SYSCNS() /* sets up some system constants */
{

10
splash2/codes/apps/water-spatial/water.C
View File

@ -45,22 +45,22 @@ MAIN_ENV
(and not have fewer boxes than processors).
*/
#include <cmath>
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <string.h>
#include <math.h>
/* include files for declarations */
#include "cnst.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "randno.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "mddata.h"
#include "global.h"
long NATOMS;
long I2;

3
splash2/codes/kernels/cholesky/amal.C
View File

@ -16,8 +16,7 @@
EXTERN_ENV
#include <cstdio>
#include <stdio.h>
#include "matrix.h"
long *next_in_super, *member_of, *super_parent;

3
splash2/codes/kernels/cholesky/assign.C
View File

@ -16,8 +16,7 @@
EXTERN_ENV
#include <cmath>
#include <math.h>
#include "matrix.h"
#define MISS_COST 4.74

3
splash2/codes/kernels/cholesky/bfac.C
View File

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include "matrix.h"
#include <math.h>
long vMiss=0, wMiss=0, xMiss=0, yMiss=0; /* Local but don't care */
extern long BS;

3
splash2/codes/kernels/cholesky/bksolve.C
View File

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include "matrix.h"
#include <math.h>
double *TriBSolve(BMatrix LB, double *b, long *PERM)
{

3
splash2/codes/kernels/cholesky/block2.C
View File

@ -16,8 +16,7 @@
EXTERN_ENV
#include <cmath>
#include <math.h>
#include "matrix.h"
extern long *node; /* ALL GLOBAL */

3
splash2/codes/kernels/cholesky/fo.C
View File

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include "matrix.h"
#include <math.h>
extern struct GlobalMemory *Global;
extern BMatrix LB;

2
splash2/codes/kernels/cholesky/matrix.H
View File

@ -14,7 +14,7 @@
/* */
/*************************************************************************/
#include <cstdio>
#include <stdio.h>
#define FitsInCache 2048

1
splash2/codes/kernels/cholesky/mf.C
View File

@ -17,7 +17,6 @@
EXTERN_ENV
#include "matrix.h"
#define HashNum 1024
#define Bucket(desti, destj, src) ((desti+destj+src)%HashNum)

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