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Fix splash2 benchmark

Browse source 
During the last commit of splash2 benchmark it seems before committing
when we ran "make clean", it effectively undid what the patch at below
link did
http://www.capsl.udel.edu/splash/Download.html

Fix this since without this it is not possible to build the arcane
splash2 benchmark.
This commit is contained in:
Sanchayan Maity 2017-04-26 21:33:02 +05:30
parent 2fcc51c2c1
commit 0f4b39775c
135 changed files with 9862 additions and 8916 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
splash2/codes/Makefile.config
View file

@ -6,7 +6,7 @@ CFLAGS := $(CFLAGS) -Wpadded -Winline -Wpointer-arith -Wsign-compare -Wendif-lab
LDFLAGS := -lm libpthread.a m5op_x86.o
BASEDIR := $(HOME)/GitSource/gem5/splash2/codes
MACROS := $(BASEDIR)/null_macros/c.m4.null.POSIX_BARRIER
MACROS := $(BASEDIR)/null_macros/c.m4.null.POSIX
M4 := m4 -s -Ulen -Uindex
x = *

29
splash2/codes/apps/barnes/stdinc.H
View file

@ -21,14 +21,13 @@
#ifndef _STDINC_H_
#define _STDINC_H_
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <time.h>
#include <sys/times.h>
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include <ctime>
#define error(msg, ...) printf(msg, ##__VA_ARGS__);
/*
* STREAM: a replacement for FILE *.
@ -60,7 +59,7 @@ typedef char byte;
*/
typedef char *string;
/*
* REAL: default type is double;
*/
@ -99,7 +98,7 @@ typedef real (*rproc)();
#define FOUR_PI 12.56637061435917295385
#define HALF_PI 1.57079632679489661923
#define FRTHRD_PI 4.18879020478639098462
/*
* ABS: returns the absolute value of its argument
* MAX: returns the argument with the highest value
@ -108,13 +107,13 @@ typedef real (*rproc)();
#define ABS(x) (((x) < 0) ? -(x) : (x))
#include "code.h"
#include "code_io.h"
#include "defs.h"
#include "getparam.h"
#include "grav.h"
#include "load.h"
#include "util.h"
#include "vectmath.h"
#include "defs.h"
#include "code.h"
#include "util.h"
#include "load.h"
#include "code_io.h"
#include "grav.h"
#include "getparam.h"
#endif

7
splash2/codes/apps/fmm/box.C
View file

@ -14,13 +14,12 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdio>
#include "box.h"
#include <stdio.h>
#include <math.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
/* How many boxes can fit on one line */
#define BOXES_PER_LINE 4

9
splash2/codes/apps/fmm/construct_grid.C
View file

@ -14,15 +14,14 @@
/* */
/*************************************************************************/
#include <cfloat>
#include <cstdio>
#include "box.h"
#include "construct_grid.h"
#include <stdio.h>
#include <float.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#include "construct_grid.h"
#define MY_PARTICLES (Local[my_id].Particles)
#define MY_NUM_PARTICLES (Local[my_id].Num_Particles)

4
splash2/codes/apps/fmm/cost_zones.C
View file

@ -14,11 +14,11 @@
/* */
/*************************************************************************/
#include "box.h"
#include "cost_zones.h"
#include "defs.h"
#include "memory.h"
#include "box.h"
#include "partition_grid.h"
#include "cost_zones.h"
#define NUM_DIRECTIONS 4

7
splash2/codes/apps/fmm/defs.C
View file

@ -14,10 +14,9 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdarg>
#include <cstdio>
#include <stdio.h>
#include <stdarg.h>
#include <math.h>
#include "defs.h"
#include "memory.h"

10
splash2/codes/apps/fmm/defs.H
View file

@ -17,11 +17,11 @@
#ifndef _Defs_H
#define _Defs_H 1
#include <cassert>
#include <climits>
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <stdio.h>
#include <stdlib.h>
#include <assert.h>
#include <math.h>
#include <limits.h>
/* Define booleans */
#ifdef TRUE

19
splash2/codes/apps/fmm/fmm.C
View file

@ -66,20 +66,19 @@
*/
#include <cerrno>
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <cstring>
#include "box.h"
#include "construct_grid.h"
#include "cost_zones.h"
#include <stdio.h>
#include <math.h>
#include <errno.h>
#include <stdlib.h>
#include <string.h>
#include "defs.h"
#include "interactions.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#include "cost_zones.h"
#include "construct_grid.h"
#include "interactions.h"
#define BASE ((((double) 4) - sqrt((double) 2)) / sqrt((double) 2))
#define MAX_LINE_SIZE 100

9
splash2/codes/apps/fmm/interactions.C
View file

@ -14,15 +14,14 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdio>
#include "box.h"
#include <stdio.h>
#include <math.h>
#include "defs.h"
#include "interactions.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#include "interactions.h"
static real Inv[MAX_EXPANSION_TERMS + 1];
static real OverInc[MAX_EXPANSION_TERMS + 1];

3
splash2/codes/apps/fmm/memory.C
View file

@ -14,8 +14,7 @@
/* */
/*************************************************************************/
#include <cfloat>
#include <float.h>
#include "defs.h"
#include "memory.h"

2
splash2/codes/apps/fmm/memory.H
View file

@ -17,9 +17,9 @@
#ifndef _Memory_H
#define _Memory_H 1
#include "box.h"
#include "defs.h"
#include "particle.h"
#include "box.h"
#define MAX_LOCKS 2048

6
splash2/codes/apps/fmm/particle.C
View file

@ -14,11 +14,9 @@
/* */
/*************************************************************************/
#include <stdio.h>
#include <unistd.h>
#include <cstdio>
#include <cstdlib>
#include <stdlib.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"

7
splash2/codes/apps/fmm/partition_grid.C
View file

@ -14,13 +14,12 @@
/* */
/*************************************************************************/
#include <climits>
#include <cmath>
#include "box.h"
#include <math.h>
#include <limits.h>
#include "defs.h"
#include "memory.h"
#include "particle.h"
#include "box.h"
#include "partition_grid.h"
#define DIVISOR(x) ((x <= 20) ? 1 : ((x - 20) * 50))

2
splash2/codes/apps/fmm/partition_grid.H
View file

@ -17,8 +17,8 @@
#ifndef _Partition_H
#define _Partition_H 1
#include "box.h"
#include "defs.h"
#include "box.h"
/* Void function type */
typedef void (*partition_function)(long my_id, box *b);

7
splash2/codes/apps/ocean/contiguous_partitions/jacobcalc.C
View file

@ -19,10 +19,9 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void jacobcalc(double ***x, double ***y, double ***z, long pid, long firstrow, long lastrow, long firstcol, long lastcol)

7
splash2/codes/apps/ocean/contiguous_partitions/jacobcalc2.C
View file

@ -19,10 +19,9 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void jacobcalc2(double ****x, double ****y, double ****z, long psiindex, long pid, long firstrow, long lastrow, long firstcol, long lastcol)

7
splash2/codes/apps/ocean/contiguous_partitions/laplacalc.C
View file

@ -18,10 +18,9 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void laplacalc(long procid, double ****x, double ****z, long psiindex, long firstrow, long lastrow, long firstcol, long lastcol)

9
splash2/codes/apps/ocean/contiguous_partitions/main.C
View file

@ -56,11 +56,10 @@ MAIN_ENV
#define DOWNRIGHT 7
#define PAGE_SIZE 4096
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
struct multi_struct *multi;

9
splash2/codes/apps/ocean/contiguous_partitions/multi.C
View file

@ -21,11 +21,10 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
/* perform multigrid (w cycles) */

9
splash2/codes/apps/ocean/contiguous_partitions/slave1.C
View file

@ -20,11 +20,10 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
void slave()

9
splash2/codes/apps/ocean/contiguous_partitions/slave2.C
View file

@ -20,11 +20,10 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
void slave2(long procid, long firstrow, long lastrow, long numrows, long firstcol, long lastcol, long numcols)

5
splash2/codes/apps/ocean/contiguous_partitions/subblock.C
View file

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "decs.h"
void subblock()

7
splash2/codes/apps/ocean/non_contiguous_partitions/jacobcalc.C
View file

@ -17,10 +17,9 @@
/* does the arakawa jacobian calculation (of the x and y matrices,
putting the results in the z matrix) for a subblock. */
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void jacobcalc(double x[IMAX][JMAX], double y[IMAX][JMAX], double z[IMAX][JMAX], long pid, long firstrow, long lastrow, long firstcol, long lastcol, long numrows, long numcols)

7
splash2/codes/apps/ocean/non_contiguous_partitions/laplacalc.C
View file

@ -20,10 +20,9 @@
performs the laplacian calculation for a subblock. */
#include <cmath>
#include <cstdio>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include "decs.h"
void laplacalc(double x[IMAX][JMAX], double z[IMAX][JMAX], long firstrow, long lastrow, long firstcol, long lastcol, long numrows, long numcols)

9
splash2/codes/apps/ocean/non_contiguous_partitions/main.C
View file

@ -23,11 +23,10 @@
/* */
/*************************************************************************/
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
MAIN_ENV

9
splash2/codes/apps/ocean/non_contiguous_partitions/multi.C
View file

@ -19,11 +19,10 @@
iterations, w cycles, and the method of half-injection for
residual computation */
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
/* perform multigrid (w cycles) */

8
splash2/codes/apps/ocean/non_contiguous_partitions/slave1.C
View file

@ -18,10 +18,10 @@
subroutine slave
**************** */
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"

9
splash2/codes/apps/ocean/non_contiguous_partitions/slave2.C
View file

@ -18,11 +18,10 @@
subroutine slave2
**************** */
#include <cmath>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <stdio.h>
#include <math.h>
#include <time.h>
#include <stdlib.h>
#include "decs.h"
void slave2(long procid, long firstrow, long lastrow, long numrows, long firstcol, long lastcol, long numcols)

2
splash2/codes/apps/radiosity/display.C
View file

@ -14,7 +14,7 @@
/* */
/*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

2
splash2/codes/apps/radiosity/elemman.C
View file

@ -23,7 +23,7 @@
*/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

3
splash2/codes/apps/radiosity/glibps/glibps.c
View file

@ -8,9 +8,8 @@
*
***************************************************************/
#include <math.h>
#include <stdio.h>
#include <math.h>
#include "pslib.h"
#define SCREEN_WIDTH (6.0*72)

2
splash2/codes/apps/radiosity/modelman.C
View file

@ -24,7 +24,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

2
splash2/codes/apps/radiosity/patchman.C
View file

@ -24,7 +24,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

20
splash2/codes/apps/radiosity/rad_main.C
View file

@ -22,15 +22,12 @@
*
***************************************************************/
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <string.h>
#if defined(SGI_GL)
#include <gl.h>
#if defined(GL_NASA)
#include <panel.h>
#endif
#endif
@ -283,16 +280,9 @@ int main(int argc, char *argv[])
min_vertex_time = timing[i]->vertex_time;
}
printf("\n\n%8s%20lu%20lu%12lu%12lu\n","Max", max_rad_time, max_refine_time,
max_wait_time, max_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Min", min_rad_time, min_refine_time,
min_wait_time, min_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Avg",
(long) (((double) total_rad_time) /
((double) (1.0 * n_processors))),
(long) (((double) total_refine_time) / ((double) (1.0 * n_processors))),
(long) (((double) total_wait_time) / ((double) (1.0 * n_processors))),
(long) (((double) total_vertex_time) / ((double) (1.0 * n_processors))));
printf("\n\n%8s%20lu%20lu%12lu%12lu\n","Max", max_rad_time, max_refine_time, max_wait_time, max_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Min", min_rad_time, min_refine_time, min_wait_time, min_vertex_time);
printf("\n%8s%20lu%20lu%12lu%12lu\n","Avg", (long) (((double) total_rad_time) / ((double) (1.0 * n_processors))), (long) (((double) total_refine_time) / ((double) (1.0 * n_processors))), (long) (((double) total_wait_time) / ((double) (1.0 * n_processors))), (long) (((double) total_vertex_time) / ((double) (1.0 * n_processors))));
printf("\n\n");
}

2
splash2/codes/apps/radiosity/rad_tools.C
View file

@ -20,7 +20,7 @@
*
***************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

4
splash2/codes/apps/radiosity/radiosity.H
View file

@ -21,8 +21,7 @@ of the program, as well as lobal data structure declarations */
#ifndef _RADIOSITY_H
#define _RADIOSITY_H
#include <cmath>
#include <math.h>
include(parallel.h)
include(patch.h)
include(model.h)
@ -30,6 +29,7 @@ include(task.h)
#include "glib.h"
#include "pslib.h"
/****************************************
*
* Configuration Parameters

2
splash2/codes/apps/radiosity/room_model.C
View file

@ -28,7 +28,7 @@
EXTERN_ENV;
#include <cstdio>
#include <stdio.h>
include(radiosity.h)

2
splash2/codes/apps/radiosity/smallobj.C
View file

@ -21,7 +21,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

2
splash2/codes/apps/radiosity/taskman.C
View file

@ -24,7 +24,7 @@
*
*************************************************************************/
#include <cstdio>
#include <stdio.h>
EXTERN_ENV;

4
splash2/codes/apps/radiosity/visible.C
View file

@ -21,8 +21,8 @@
*
***************************************************************/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
EXTERN_ENV;

7
splash2/codes/apps/raytrace/bbox.C
View file

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* InquireBoundBoxValues - return min and max bound values for each coordinate axis

7
splash2/codes/apps/raytrace/cr.C
View file

@ -26,11 +26,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
GRID *gridlist = NULL;
/*

9
splash2/codes/apps/raytrace/env.C
View file

@ -25,12 +25,13 @@
* routines to manipulate lights, colors, and to print the environment.
*/
#include <cmath>
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <math.h>
#include <string.h>
#include "rt.h"
/*
* Define environment specification opcodes.
*/

7
splash2/codes/apps/raytrace/fbuf.C
View file

@ -31,11 +31,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
static struct /* Runlength pixel definition. */
{
U8 r, g, b; /* Color. */

10
splash2/codes/apps/raytrace/geo.C
View file

@ -27,14 +27,14 @@
*/
#include <stdio.h>
#include <fcntl.h>
#include <cmath>
#include <cstdio>
#include <cstring>
#include <math.h>
#include <string.h>
#include "rt.h"
/*
* Allocate and initialize sphere function pointer array.
*/

5
splash2/codes/apps/raytrace/huprn.C
View file

@ -25,9 +25,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
VOID prn_voxel(VOXEL *v)

7
splash2/codes/apps/raytrace/husetup.C
View file

@ -26,11 +26,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* Huniform_defaults - setup the five HUG parameter defaults

5
splash2/codes/apps/raytrace/hutv.C
View file

@ -23,9 +23,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*

7
splash2/codes/apps/raytrace/isect.C
View file

@ -26,11 +26,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* Intersect - intersect ray with objects in linked list

6
splash2/codes/apps/raytrace/main.C
View file

@ -80,11 +80,11 @@
#define VERSION "1.00"
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
CHAR *ProgName = "RAYTRACE"; /* The program name. */
INT nprocs = 1; /* The number of processors to use. */
INT MaxGlobMem = 32; /* Maximum global memory needed (MB).*/

7
splash2/codes/apps/raytrace/matrix.C
View file

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
typedef REAL GJMATRIX[4][8]; /* Matrix for Gauss-Jordan inversion.*/

7
splash2/codes/apps/raytrace/memory.C
View file

@ -29,11 +29,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
#define CKSM 0x55AA55AA
#define PAGESIZE (4*1024)
#define THRESHOLD (sizeof(NODE) + 16)

7
splash2/codes/apps/raytrace/poly.C
View file

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* PolyName - return the object name

5
splash2/codes/apps/raytrace/raystack.C
View file

@ -35,9 +35,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
#define PAGE_SIZE 4096

9
splash2/codes/apps/raytrace/rltotiff/rltotiff.c
View file

@ -14,12 +14,11 @@
/* */
/*************************************************************************/
#include <malloc.h>
#include <stdio.h>
#include <stdlib.h>
#include <unistd.h>
#include "tiff_rgba_io.h"
#include <stdio.h>
#include <unistd.h>
#include <malloc.h>
#include <stdlib.h>
typedef short SHORT;
typedef long LONG;

1
splash2/codes/apps/raytrace/rltotiff/tiff_rgba_io.c
View file

@ -25,7 +25,6 @@ static char sccsid[] = "@(#)savemap.c 1.3 2/6/9q";
#include <stdio.h>
#include <stdlib.h>
#include <tiffio.h>
#include "tiff_rgba_io.h"
#define streq(a,b) (strcmp(a,b) == 0)

7
splash2/codes/apps/raytrace/shade.C
View file

@ -28,11 +28,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* SpecularDirection - compute reflected ray

7
splash2/codes/apps/raytrace/sph.C
View file

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* SphName - return the object name

5
splash2/codes/apps/raytrace/trace.C
View file

@ -25,9 +25,8 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*

7
splash2/codes/apps/raytrace/tri.C
View file

@ -25,11 +25,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
#define X_NORM 1
#define Y_NORM 2
#define Z_NORM 3

7
splash2/codes/apps/raytrace/workpool.C
View file

@ -30,11 +30,12 @@
*/
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "rt.h"
/*
* NAME
* PutJob - put another job into pid's work pool

1
splash2/codes/apps/volrend/file.C
View file

@ -17,7 +17,6 @@
/********** storing/loading of large arrays to/from files **********/
#include <fcntl.h>
#include "incl.h"
#define PMODE 0644 /* RW for owner, R for group, R for others */

16
splash2/codes/apps/volrend/incl.H
View file

@ -21,15 +21,13 @@
*************************************************************************/
#include <sys/types.h>
#include <climits>
#include <cmath> /* Definitions for mathematical library */
#include <cstdio> /* Definitions for standard I/O library */
#include "address.h" /* Map address macros */
#include "user_options.h" /* User options defined at compile time */
#include "const.h" /* Constant definitions */
#include "my_types.h" /* User defined type */
#include "global.h" /* Global variables */
#include "macros.h" /* Definition of general C macros */
#include "my_types.h" /* User defined type */
#include "user_options.h" /* User options defined at compile time */
#include "address.h" /* Map address macros */
#include <stdio.h> /* Definitions for standard I/O library */
#include <math.h> /* Definitions for mathematical library */
#include <limits.h>
#include <sys/types.h>

10
splash2/codes/apps/volrend/main.C
View file

@ -26,13 +26,11 @@
*************************************************************************/
#include <sys/resource.h>
#include <sys/time.h>
#include <climits>
#include <cstring>
#include "incl.h"
#include <string.h>
#include <sys/time.h>
#include <sys/resource.h>
#include <limits.h>
#include "tiffio.h"
#define SH_MEM_AMT 60000000

3
splash2/codes/apps/volrend/map.C
View file

@ -20,8 +20,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
/* The following declarations show the layout of the .den file. */

3
splash2/codes/apps/volrend/normal.C
View file

@ -21,8 +21,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
/* The following declarations show the layout of the .norm file. */

3
splash2/codes/apps/volrend/octree.C
View file

@ -20,8 +20,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
#define WRITE_PYR(IBIT,ILEVEL,IZ,IY,IX)\

3
splash2/codes/apps/volrend/opacity.C
View file

@ -21,8 +21,7 @@
* *
******************************************************************************/
#include <cstring>
#include <string.h>
#include "incl.h"
/* The following declarations show the layout of the .opc file. */

4
splash2/codes/apps/water-nsquared/bndry.C
View file

@ -15,11 +15,11 @@
/*************************************************************************/
EXTERN_ENV
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* this routine puts the molecules back inside the box if they are out */
void BNDRY(long ProcID)

13
splash2/codes/apps/water-nsquared/cnstnt.C
View file

@ -15,15 +15,14 @@
/*************************************************************************/
EXTERN_ENV
#include <cstdio>
#include "cnst.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "parameters.h"
#include <stdio.h>
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "frcnst.h"
#include "fileio.h"
#include "parameters.h"
#include "global.h"
/* set up some constants
* N : NORDER + 1 = 7 for a sixth-order method

3
splash2/codes/apps/water-nsquared/cshift.C
View file

@ -15,8 +15,7 @@
/*************************************************************************/
EXTERN_ENV
#include <cmath>
#include <math.h>
#include "global.h"
/* return the value of a with the same sign as b */

12
splash2/codes/apps/water-nsquared/initia.C
View file

@ -15,16 +15,16 @@
/*************************************************************************/
EXTERN_ENV
#include "math.h"
#include "stdio.h"
#include "mdvar.h"
#include "water.h"
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "stdio.h"
#include "water.h"
#include "global.h"
void INITIA()
{

10
splash2/codes/apps/water-nsquared/interf.C
View file

@ -15,15 +15,15 @@
/*************************************************************************/
EXTERN_ENV
#include "cnst.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
double ****PFORCES;

10
splash2/codes/apps/water-nsquared/intraf.C
View file

@ -15,15 +15,15 @@
/*************************************************************************/
EXTERN_ENV
#include "frcnst.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "frcnst.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void INTRAF(double *VIR, long ProcID)
{

4
splash2/codes/apps/water-nsquared/kineti.C
View file

@ -15,12 +15,12 @@
/*************************************************************************/
EXTERN_ENV
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* this routine computes kinetic energy in each of the three spatial
dimensions, and puts the computed values in the SUM array */

14
splash2/codes/apps/water-nsquared/mdmain.C
View file

@ -15,16 +15,16 @@
/*************************************************************************/
EXTERN_ENV
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "stdio.h"
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "fileio.h"
#include "split.h"
#include "global.h"
/************************************************************************/

12
splash2/codes/apps/water-nsquared/poteng.C
View file

@ -15,15 +15,15 @@
/*************************************************************************/
EXTERN_ENV
#include "frcnst.h"
#include "global.h"
#include "math.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "frcnst.h"
#include "water.h"
#include "wwpot.h"
#include "math.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void POTENG(double *POTA, double *POTR, double *PTRF, long ProcID)
{

4
splash2/codes/apps/water-nsquared/predcor.C
View file

@ -15,11 +15,11 @@
/*************************************************************************/
EXTERN_ENV
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* predicts new values for displacement and its five derivatives
*

14
splash2/codes/apps/water-nsquared/syscons.C
View file

@ -15,16 +15,16 @@
/*************************************************************************/
EXTERN_ENV
#include <cmath>
#include "cnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "stdio.h"
#include <math.h>
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "global.h"
void SYSCNS() /* sets up some system constants */
{

15
splash2/codes/apps/water-nsquared/water.C
View file

@ -44,21 +44,20 @@
*/
MAIN_ENV
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <string.h>
#include "split.h"
/* include files for declarations */
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "water.h"
#include "wwpot.h"
long NMOL,NORDER,NATMO,NATMO3,NMOL1;
long NATOMS;

7
splash2/codes/apps/water-spatial/bndry.C
View file

@ -16,13 +16,12 @@
EXTERN_ENV
#include <cstdio>
#include "global.h"
#include "mddata.h"
#include <stdio.h>
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void BNDRY(long ProcID) /* this routine puts the molecules back inside the box if they are out */
{

15
splash2/codes/apps/water-spatial/cnstnt.C
View file

@ -16,16 +16,15 @@
EXTERN_ENV
#include <cstdio>
#include "cnst.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "parameters.h"
#include <stdio.h>
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "frcnst.h"
#include "fileio.h"
#include "parameters.h"
#include "mddata.h"
#include "global.h"
/* set up some constants; this routine is executed by
* a single processor before others are created

7
splash2/codes/apps/water-spatial/cshift.C
View file

@ -16,12 +16,11 @@
EXTERN_ENV
#include <cmath>
#include "global.h"
#include "mddata.h"
#include <math.h>
#include "parameters.h"
#include "mddata.h"
#include "water.h"
#include "global.h"
/* return the value of a with the same sign as b */
#define sign(a,b) (b < 0 ) ? ( (a < 0) ? a : -a) : ( (a < 0) ? -a : a)

13
splash2/codes/apps/water-spatial/initia.C
View file

@ -16,17 +16,16 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <math.h>
#include <stdio.h>
#include "mdvar.h"
#include "water.h"
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "water.h"
#include "global.h"
void INITIA()
{

15
splash2/codes/apps/water-spatial/interf.C
View file

@ -16,17 +16,16 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include "cnst.h"
#include "global.h"
#include "mddata.h"
#include <stdio.h>
#include <math.h>
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void INTERF(long DEST, double *VIR, long ProcID)
{

13
splash2/codes/apps/water-spatial/intraf.C
View file

@ -16,17 +16,16 @@
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void INTRAF(double *VIR, long ProcID)
{

7
splash2/codes/apps/water-spatial/kineti.C
View file

@ -16,13 +16,12 @@
EXTERN_ENV
#include <cmath>
#include "global.h"
#include "mddata.h"
#include <math.h>
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* this routine computes kinetic energy in each of the three spatial
dimensions, and puts the computed values in the SUM array */

14
splash2/codes/apps/water-spatial/mdmain.C
View file

@ -16,17 +16,17 @@
EXTERN_ENV
#include <cstdio>
#include <stdio.h>
#include "cnst.h"
#include "fileio.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "fileio.h"
#include "split.h"
#include "global.h"
/************************************************************************/

13
splash2/codes/apps/water-spatial/poteng.C
View file

@ -16,16 +16,15 @@
EXTERN_ENV
#include <cmath>
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "split.h"
#include "frcnst.h"
#include "water.h"
#include "wwpot.h"
#include <math.h>
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
void POTENG(double *POTA, double *POTR, double *PTRF, long ProcID)
{

4
splash2/codes/apps/water-spatial/predcor.C
View file

@ -16,11 +16,11 @@
EXTERN_ENV
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mddata.h"
#include "split.h"
#include "global.h"
/* predicts new values for displacement and its five derivatives
* using Gear's sixth-order predictor-corrector method

13
splash2/codes/apps/water-spatial/syscons.C
View file

@ -15,16 +15,17 @@
/*************************************************************************/
EXTERN_ENV
#include <cmath>
#include <cstdio>
#include <stdio.h>
#include <math.h>
#include "cnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "mdvar.h"
#include "water.h"
#include "wwpot.h"
#include "cnst.h"
#include "mddata.h"
#include "global.h"
void SYSCNS() /* sets up some system constants */
{

10
splash2/codes/apps/water-spatial/water.C
View file

@ -45,22 +45,22 @@ MAIN_ENV
(and not have fewer boxes than processors).
*/
#include <cmath>
#include <cstdio>
#include <cstring>
#include <stdio.h>
#include <string.h>
#include <math.h>
/* include files for declarations */
#include "cnst.h"
#include "fileio.h"
#include "frcnst.h"
#include "global.h"
#include "mddata.h"
#include "mdvar.h"
#include "parameters.h"
#include "randno.h"
#include "split.h"
#include "water.h"
#include "wwpot.h"
#include "mddata.h"
#include "global.h"
long NATOMS;
long I2;

3
splash2/codes/kernels/cholesky/amal.C
View file

@ -16,8 +16,7 @@
EXTERN_ENV
#include <cstdio>
#include <stdio.h>
#include "matrix.h"
long *next_in_super, *member_of, *super_parent;

3
splash2/codes/kernels/cholesky/assign.C
View file

@ -16,8 +16,7 @@
EXTERN_ENV
#include <cmath>
#include <math.h>
#include "matrix.h"
#define MISS_COST 4.74

3
splash2/codes/kernels/cholesky/bfac.C
View file

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include "matrix.h"
#include <math.h>
long vMiss=0, wMiss=0, xMiss=0, yMiss=0; /* Local but don't care */
extern long BS;

3
splash2/codes/kernels/cholesky/bksolve.C
View file

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include "matrix.h"
#include <math.h>
double *TriBSolve(BMatrix LB, double *b, long *PERM)
{

3
splash2/codes/kernels/cholesky/block2.C
View file

@ -16,8 +16,7 @@
EXTERN_ENV
#include <cmath>
#include <math.h>
#include "matrix.h"
extern long *node; /* ALL GLOBAL */

3
splash2/codes/kernels/cholesky/fo.C
View file

@ -16,9 +16,8 @@
EXTERN_ENV
#include <cmath>
#include "matrix.h"
#include <math.h>
extern struct GlobalMemory *Global;
extern BMatrix LB;

2
splash2/codes/kernels/cholesky/matrix.H
View file

@ -14,7 +14,7 @@
/* */
/*************************************************************************/
#include <cstdio>
#include <stdio.h>
#define FitsInCache 2048

1
splash2/codes/kernels/cholesky/mf.C
View file

@ -17,7 +17,6 @@
EXTERN_ENV
#include "matrix.h"
#define HashNum 1024
#define Bucket(desti, destj, src) ((desti+destj+src)%HashNum)

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