Add support for declaring SimObjects to swig so their members can be wrapped.
Make sim_object.i only contain declarations for SimObject.
Create system.i to contain declarations for System.
Update python code to properly call the C++ given the new changes.
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directly configured by python. Move stuff from root.(cc|hh) to
core.(cc|hh) since it really belogs there now.
In the process, simplify how ticks are used in the python code.
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so things are organized in a more sensible manner. Take apart
finalInit and expose the individual functions which are now
called from python. Make checkpointing a bit easier to use.
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