02098f8e7b
information that can be used for other aspects of sending jobs. New graphing output stuff with matplotlib. util/pbs/job.py: Shuffle code around and create the JobDir class which encapsulates all of the functionality needed for making, organizing, and cleaning a job directory. Better status output util/pbs/jobfile.py: Majory re-working of the jobfile code. A job file now consists of several objects that describe how jobs should be run, it includes information about checkpoints, and graphing. util/pbs/send.py: use the new jobfile code. deal with the 15 character limit of pbs by truncating the name and using the raj hack. util/stats/db.py: fix the __str__ function for nodes provide __getitem__ for the Database class util/stats/stats.py: use the jobfile stuff to figure out what the proper naming and organziation of the graphs should be. move all output code to output.py, get rid of ploticus and use matplotlib --HG-- rename : util/categories.py => util/stats/categories.py extra : convert_revision : 0d793cbf6ad9492290e8ec875ce001c84095e1f7
272 lines
7.9 KiB
Python
Executable file
272 lines
7.9 KiB
Python
Executable file
#!/usr/bin/env python
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# Copyright (c) 2005 The Regents of The University of Michigan
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are
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# met: redistributions of source code must retain the above copyright
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# notice, this list of conditions and the following disclaimer;
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# redistributions in binary form must reproduce the above copyright
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# notice, this list of conditions and the following disclaimer in the
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# documentation and/or other materials provided with the distribution;
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# neither the name of the copyright holders nor the names of its
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# contributors may be used to endorse or promote products derived from
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# this software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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#
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# Authors: Ali Saidi
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# Nathan Binkert
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import os, os.path, re, socket, sys
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from os import environ as env, listdir
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from os.path import basename, isdir, isfile, islink, join as joinpath, normpath
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from filecmp import cmp as filecmp
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from shutil import copy
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def nfspath(dir):
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if dir.startswith('/.automount/'):
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dir = '/n/%s' % dir[12:]
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elif not dir.startswith('/n/'):
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dir = '/n/%s%s' % (socket.gethostname().split('.')[0], dir)
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return dir
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def syncdir(srcdir, destdir):
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srcdir = normpath(srcdir)
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destdir = normpath(destdir)
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if not isdir(destdir):
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sys.exit('destination directory "%s" does not exist' % destdir)
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for root, dirs, files in os.walk(srcdir):
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root = normpath(root)
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prefix = os.path.commonprefix([root, srcdir])
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root = root[len(prefix):]
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if root.startswith('/'):
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root = root[1:]
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for rem in [ d for d in dirs if d.startswith('.') or d == 'SCCS']:
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dirs.remove(rem)
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for entry in dirs:
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newdir = joinpath(destdir, root, entry)
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if not isdir(newdir):
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os.mkdir(newdir)
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print 'mkdir', newdir
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for i,d in enumerate(dirs):
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if islink(joinpath(srcdir, root, d)):
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dirs[i] = joinpath(d, '.')
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for entry in files:
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dest = normpath(joinpath(destdir, root, entry))
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src = normpath(joinpath(srcdir, root, entry))
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if not isfile(dest) or not filecmp(src, dest):
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print 'copy %s %s' % (dest, src)
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copy(src, dest)
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progpath = nfspath(sys.path[0])
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progname = basename(sys.argv[0])
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usage = """\
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Usage:
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%(progname)s [-c] [-e] [-f] [-j <jobfile>] [-q queue] [-v] <regexp>
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-c clean directory if job can be run
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-e only echo pbs command info, don't actually send the job
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-f force the job to run regardless of state
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-q <queue> submit job to the named queue
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-j <jobfile> specify the jobfile (default is <basedir>/test.py)
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-v be verbose
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%(progname)s [-j <jobfile>] -l [-v] <regexp>
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-j <jobfile> specify the jobfile (default is <basedir>/test.py)
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-l list job names, don't submit
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-v be verbose (list job parameters)
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%(progname)s -h
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-h display this help
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""" % locals()
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try:
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import getopt
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opts, args = getopt.getopt(sys.argv[1:], '-CRcd:efhj:lq:v')
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except getopt.GetoptError:
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sys.exit(usage)
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clean = False
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onlyecho = False
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exprs = []
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force = False
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listonly = False
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queue = ''
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verbose = False
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jfile = 'Base/test.py'
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docpts = False
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doruns = True
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runflag = False
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for opt,arg in opts:
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if opt == '-C':
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docpts = True
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if opt == '-R':
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runflag = True
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if opt == '-c':
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clean = True
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if opt == '-e':
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onlyecho = True
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if opt == '-f':
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force = True
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if opt == '-h':
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print usage
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sys.exit(0)
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if opt == '-j':
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jfile = arg
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if opt == '-l':
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listonly = True
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if opt == '-q':
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queue = arg
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if opt == '-v':
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verbose = True
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if docpts:
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doruns = runflag
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for arg in args:
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exprs.append(re.compile(arg))
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import jobfile, pbs
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from job import JobDir, date
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conf = jobfile.JobFile(jfile)
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if not listonly and not onlyecho and isdir(conf.linkdir):
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if verbose:
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print 'Checking for outdated files in Link directory'
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syncdir(conf.linkdir, conf.basedir)
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jobnames = {}
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joblist = []
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if docpts and doruns:
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gen = conf.alljobs()
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elif docpts:
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gen = conf.checkpoints()
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elif doruns:
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gen = conf.jobs()
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for job in gen:
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if job.name in jobnames:
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continue
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if exprs:
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for expr in exprs:
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if expr.match(job.name):
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joblist.append(job)
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break
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else:
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joblist.append(job)
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if listonly:
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if verbose:
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for job in joblist:
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job.printinfo()
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else:
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for job in joblist:
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print job.name
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sys.exit(0)
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if not onlyecho:
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newlist = []
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for job in joblist:
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jobdir = JobDir(joinpath(conf.rootdir, job.name))
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if jobdir.exists():
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if not force:
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status = jobdir.getstatus()
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if status == 'queued':
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continue
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if status == 'running':
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continue
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if status == 'success':
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continue
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if not clean:
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sys.exit('job directory %s not clean!' % jobdir)
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jobdir.clean()
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newlist.append(job)
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joblist = newlist
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class NameHack(object):
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def __init__(self, host='pbs.pool', port=24465):
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self.host = host
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self.port = port
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self.socket = None
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def setname(self, jobid, jobname):
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try:
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jobid = int(jobid)
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except ValueError:
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jobid = int(jobid.strip().split('.')[0])
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jobname = jobname.strip()
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# since pbs can handle jobnames of 15 characters or less,
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# don't use the raj hack.
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if len(jobname) <= 15:
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return
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if self.socket is None:
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import socket
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self.socket = socket.socket()
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# Connect to pbs.pool and send the jobid/jobname pair to port
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# 24465 (Raj didn't realize that there are only 64k ports and
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# setup inetd to point to port 90001)
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self.socket.connect((self.host, self.port))
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self.socket.send("%s %s\n" % (jobid, jobname))
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namehack = NameHack()
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for job in joblist:
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jobdir = JobDir(joinpath(conf.rootdir, job.name))
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if not onlyecho:
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jobdir.create()
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print 'Job name: %s' % job.name
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print 'Job directory: %s' % jobdir
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qsub = pbs.qsub()
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qsub.pbshost = 'simpool.eecs.umich.edu'
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qsub.stdout = jobdir.file('jobout')
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qsub.name = job.name[:15]
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qsub.join = True
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qsub.node_type = 'FAST'
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qsub.env['ROOTDIR'] = conf.rootdir
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qsub.env['JOBNAME'] = job.name
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if len(queue):
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qsub.queue = queue
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qsub.build(joinpath(progpath, 'job.py'))
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if verbose:
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print 'PBS Command: %s' % qsub.command
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if not onlyecho:
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ec = qsub.do()
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if ec == 0:
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jobid = qsub.result
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print 'PBS Jobid: %s' % jobid
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namehack.setname(jobid, job.name)
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queued = date()
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jobdir.echofile('.queued', queued)
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jobdir.setstatus('queued on %s' % queued)
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else:
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print 'PBS Failed'
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