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Fixes to thes pbs send script

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util/pbs/send.py:
    - add a -d to set the job root directory allowing one to run
    send.py from anywhere.
    - specify full paths to files instead of relative paths to make -d
    work and to allow ssh qsub to work again.
    - make the Link directory only copy links that point to regular files.

--HG--
extra : convert_revision : dd330cee08b97c5d72c3d58ef123f83ac7ccede7
This commit is contained in:
Nathan Binkert 2005-02-09 16:20:53 -05:00
parent 26ef1f56c8
commit 061f40df08
1 changed files with 24 additions and 19 deletions
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43
util/pbs/send.py
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@ -54,7 +54,7 @@ Usage:
try: try:
import getopt import getopt
opts, args = getopt.getopt(sys.argv[1:], '-cefhlq:v') opts, args = getopt.getopt(sys.argv[1:], '-cd:efhlq:v')
except getopt.GetoptError: except getopt.GetoptError:
sys.exit(usage) sys.exit(usage)
@ -65,42 +65,48 @@ force = False
listonly = False listonly = False
queue = '' queue = ''
verbose = False verbose = False
for o,a in opts: rootdir = re.sub(r'^/\.automount/', r'/n/', os.getcwd())
if o == '-c': for opt,arg in opts:
if opt == '-c':
clean = True clean = True
if o == '-e': if opt == '-d':
rootdir = arg
if opt == '-e':
onlyecho = True onlyecho = True
if o == '-f': if opt == '-f':
force = True force = True
if o == '-h': if opt == '-h':
print usage print usage
sys.exit(0) sys.exit(0)
if o == '-l': if opt == '-l':
listonly = True listonly = True
if o == '-q': if opt == '-q':
queue = a queue = arg
if o == '-v': if opt == '-v':
verbose = True verbose = True
basedir = joinpath(rootdir, 'Base')
linkdir = joinpath(rootdir, 'Link')
for arg in args: for arg in args:
exprs.append(re.compile(arg)) exprs.append(re.compile(arg))
if not listonly and not onlyecho and isdir('Link'): if not listonly and not onlyecho and isdir(linkdir):
print 'Checking for outdated files in Link directory' print 'Checking for outdated files in Link directory'
entries = listdir('Link') entries = listdir(linkdir)
for entry in entries: for entry in entries:
link = joinpath('Link', entry) link = joinpath(linkdir, entry)
if not islink(link): if not islink(link) or not isfile(link):
continue continue
base = joinpath('Base', entry) base = joinpath(basedir, entry)
if not isfile(base) or not filecmp(link, base): if not isfile(base) or not filecmp(link, base):
print '%s is different than source %s...copying' % (base, link) print 'Base/%s is different than Link/%s: copying' % (entry, entry)
copyfile(link, base) copyfile(link, base)
import job, jobfile, pbs import job, jobfile, pbs
test = jobfile.JobFile(joinpath('Base', 'test.py')) test = jobfile.JobFile(joinpath(basedir, 'test.py'))
joblist = [] joblist = []
for jobname in test.jobs: for jobname in test.jobs:
@ -143,7 +149,6 @@ if not onlyecho:
jl.append(jobname) jl.append(jobname)
joblist = jl joblist = jl
rootdir = re.sub(r'^/\.automount/', r'/n/', os.getcwd())
for jobname in joblist: for jobname in joblist:
jobdir = joinpath(rootdir, jobname) jobdir = joinpath(rootdir, jobname)
@ -165,5 +170,5 @@ for jobname in joblist:
if len(queue): if len(queue):
qsub.queue = queue qsub.queue = queue
qsub.do(joinpath('Base', 'job.py')) qsub.do(joinpath(basedir, 'job.py'))
print >>sys.stderr, '' print >>sys.stderr, ''