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Fixes to thes pbs send script

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util/pbs/send.py:
    - add a -d to set the job root directory allowing one to run
    send.py from anywhere.
    - specify full paths to files instead of relative paths to make -d
    work and to allow ssh qsub to work again.
    - make the Link directory only copy links that point to regular files.

--HG--
extra : convert_revision : dd330cee08b97c5d72c3d58ef123f83ac7ccede7
This commit is contained in:
Nathan Binkert 2005-02-09 16:20:53 -05:00
parent 26ef1f56c8
commit 061f40df08
1 changed files with 24 additions and 19 deletions
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43
util/pbs/send.py
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@ -54,7 +54,7 @@ Usage:
try:
import getopt
opts, args = getopt.getopt(sys.argv[1:], '-cefhlq:v')
opts, args = getopt.getopt(sys.argv[1:], '-cd:efhlq:v')
except getopt.GetoptError:
sys.exit(usage)
@ -65,42 +65,48 @@ force = False
listonly = False
queue = ''
verbose = False
for o,a in opts:
if o == '-c':
rootdir = re.sub(r'^/\.automount/', r'/n/', os.getcwd())
for opt,arg in opts:
if opt == '-c':
clean = True
if o == '-e':
if opt == '-d':
rootdir = arg
if opt == '-e':
onlyecho = True
if o == '-f':
if opt == '-f':
force = True
if o == '-h':
if opt == '-h':
print usage
sys.exit(0)
if o == '-l':
if opt == '-l':
listonly = True
if o == '-q':
queue = a
if o == '-v':
if opt == '-q':
queue = arg
if opt == '-v':
verbose = True
basedir = joinpath(rootdir, 'Base')
linkdir = joinpath(rootdir, 'Link')
for arg in args:
exprs.append(re.compile(arg))
if not listonly and not onlyecho and isdir('Link'):
if not listonly and not onlyecho and isdir(linkdir):
print 'Checking for outdated files in Link directory'
entries = listdir('Link')
entries = listdir(linkdir)
for entry in entries:
link = joinpath('Link', entry)
if not islink(link):
link = joinpath(linkdir, entry)
if not islink(link) or not isfile(link):
continue
base = joinpath('Base', entry)
base = joinpath(basedir, entry)
if not isfile(base) or not filecmp(link, base):
print '%s is different than source %s...copying' % (base, link)
print 'Base/%s is different than Link/%s: copying' % (entry, entry)
copyfile(link, base)
import job, jobfile, pbs
test = jobfile.JobFile(joinpath('Base', 'test.py'))
test = jobfile.JobFile(joinpath(basedir, 'test.py'))
joblist = []
for jobname in test.jobs:
@ -143,7 +149,6 @@ if not onlyecho:
jl.append(jobname)
joblist = jl
rootdir = re.sub(r'^/\.automount/', r'/n/', os.getcwd())
for jobname in joblist:
jobdir = joinpath(rootdir, jobname)
@ -165,5 +170,5 @@ for jobname in joblist:
if len(queue):
qsub.queue = queue
qsub.do(joinpath('Base', 'job.py'))
qsub.do(joinpath(basedir, 'job.py'))
print >>sys.stderr, ''