250 lines
7.7 KiB
Python
250 lines
7.7 KiB
Python
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# Copyright (c) 2006 The Regents of The University of Michigan
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are
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# met: redistributions of source code must retain the above copyright
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# notice, this list of conditions and the following disclaimer;
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# redistributions in binary form must reproduce the above copyright
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# notice, this list of conditions and the following disclaimer in the
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# documentation and/or other materials provided with the distribution;
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# neither the name of the copyright holders nor the names of its
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# contributors may be used to endorse or promote products derived from
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# this software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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#
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# Authors: Kevin Lim
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import os, popen2, re, sys
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class MyPOpen(object):
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def __init__(self, cmd, input = None, output = None, bufsize = -1):
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self.status = -1
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if input is None:
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p2c_read, p2c_write = os.pipe()
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self.tochild = os.fdopen(p2c_write, 'w', bufsize)
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else:
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p2c_write = None
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if isinstance(input, file):
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p2c_read = input.fileno()
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elif isinstance(input, str):
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input = file(input, 'r')
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p2c_read = input.fileno()
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elif isinstance(input, int):
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p2c_read = input
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else:
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raise AttributeError
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if output is None:
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c2p_read, c2p_write = os.pipe()
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self.fromchild = os.fdopen(c2p_read, 'r', bufsize)
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else:
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c2p_read = None
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if isinstance(output, file):
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c2p_write = output.fileno()
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elif isinstance(output, str):
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output = file(output, 'w')
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c2p_write = output.fileno()
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elif isinstance(output, int):
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c2p_write = output
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else:
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raise AttributeError
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self.pid = os.fork()
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if self.pid == 0:
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os.dup2(p2c_read, sys.stdin.fileno())
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os.dup2(c2p_write, sys.stdout.fileno())
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os.dup2(c2p_write, sys.stderr.fileno())
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try:
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os.execvp(cmd[0], cmd)
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finally:
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os._exit(1)
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os.close(p2c_read)
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os.close(c2p_write)
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def poll(self):
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if self.status < 0:
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pid, status = os.waitpid(self.pid, os.WNOHANG)
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if pid == self.pid:
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self.status = status
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return self.status
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def wait(self):
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if self.status < 0:
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pid, status = os.waitpid(self.pid, 0)
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if pid == self.pid:
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self.status = status
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return self.status
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class oarsub:
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def __init__(self):
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self.walltime = None
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self.queue = None
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self.properties = None
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# OAR 2.0 parameters only!
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self.name = None
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self.afterok = None
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self.notify = None
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self.stderr = None
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self.stdout = None
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self.oarhost = None
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self.oarsub = 'oarsub'
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self.jobid = re.compile('IdJob = (\S+)')
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#self.outfile = open("jobnames.dat", "a+")
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def build(self, script, args = []):
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self.cmd = [ self.oarsub ]
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print "args:", args
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print "script:", script
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if self.properties:
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self.cmd.append('-p"%s"' % self.properties )
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if self.queue:
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self.cmd.append('-q "%s"' % self.queue)
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if self.walltime:
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self.cmd.append('-l walltime=%s' % self.walltime)
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if script[0] != "/":
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self.script = os.getcwd()
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else:
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self.script = script
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self.cmd.extend(args)
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self.cmd.append(self.script)
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#cmd = [ 'ssh', '-x', self.oarhost, '"cd %s; %s"' % (os.getcwd(), self.command) ]
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self.command = ' '.join(self.cmd)
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print "command: [%s]" % self.command
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def do(self):
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oar = MyPOpen(self.cmd)
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self.result = oar.fromchild.read()
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ec = oar.wait()
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if ec != 0 and self.oarhost:
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pstdin, pstdout = os.popen4(self.command)
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self.result = pstdout.read()
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jobid = self.jobid.match(self.result)
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if jobid == None:
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print "Couldn't get jobid from [%s]" % self.result
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sys.exit(1)
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else:
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#self.outfile.write("%d %s\n" %(int(jobid.group(1)), self.name));
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#self.outfile.flush()
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self.result = jobid.group(1)
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return 0
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class qsub:
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def __init__(self):
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self.afterok = None
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self.hold = False
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self.join = False
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self.keep_stdout = False
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self.keep_stderr = False
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self.node_type = None
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self.mail_abort = False
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self.mail_begin = False
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self.mail_end = False
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self.name = None
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self.stdout = None
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self.priority = None
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self.queue = None
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self.pbshost = None
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self.qsub = 'qsub'
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self.env = {}
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def build(self, script, args = []):
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self.cmd = [ self.qsub ]
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if self.env:
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arg = '-v'
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arg += ','.join([ '%s=%s' % i for i in self.env.iteritems() ])
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self.cmd.append(arg)
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if self.hold:
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self.cmd.append('-h')
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if self.stdout:
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self.cmd.append('-olocalhost:' + self.stdout)
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if self.keep_stdout and self.keep_stderr:
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self.cmd.append('-koe')
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elif self.keep_stdout:
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self.cmd.append('-ko')
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elif self.keep_stderr:
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self.cmd.append('-ke')
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else:
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self.cmd.append('-kn')
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if self.join:
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self.cmd.append('-joe')
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if self.node_type:
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self.cmd.append('-lnodes=' + self.node_type)
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if self.mail_abort or self.mail_begin or self.mail_end:
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flags = ''
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if self.mail_abort:
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flags.append('a')
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if self.mail_begin:
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flags.append('b')
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if self.mail_end:
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flags.append('e')
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if len(flags):
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self.cmd.append('-m ' + flags)
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else:
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self.cmd.append('-mn')
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if self.name:
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self.cmd.append("-N%s" % self.name)
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if self.priority:
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self.cmd.append('-p' + self.priority)
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if self.queue:
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self.cmd.append('-q' + self.queue)
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if self.afterok:
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self.cmd.append('-Wdepend=afterok:%s' % self.afterok)
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self.cmd.extend(args)
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self.script = script
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self.command = ' '.join(self.cmd + [ self.script ])
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def do(self):
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pbs = MyPOpen(self.cmd + [ self.script ])
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self.result = pbs.fromchild.read()
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ec = pbs.wait()
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if ec != 0 and self.pbshost:
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cmd = ' '.join(self.cmd + [ '-' ])
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cmd = [ 'ssh', '-x', self.pbshost, cmd ]
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self.command = ' '.join(cmd)
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ssh = MyPOpen(cmd, input = self.script)
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self.result = ssh.fromchild.read()
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ec = ssh.wait()
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return ec
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